PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00505.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 397aa    MW: 43921.6 Da    PI: 7.4711
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00505.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.61.3e-25138203171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL+llt+kf++ll+++++g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  Sme2.5_00505.1_g00007.1 138 RYDNSLGLLTKKFISLLQEADDGTLDLNHSADVL---EV--AKRRIYDITNVLEGIGLIEKTTKSRIRWKG 203
                              689*******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-26138205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.6E-31138203IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.26E-16138201IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.1E-23140203IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.88E-24215319No hitNo description
CDDcd146604.17E-38215320No hitNo description
PfamPF164216.8E-24219317IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSTTARENVD LNLSLASPLH LRSSPSPSNI AVARSPCRSH PSFLPNICSE SLTVASNSRP  60
SSTFGFGPKN EIAKSEEYNC GYGVSKRSPA ANYALPQQAA STRTKQSSKG KSSRDNITAA  120
KGINADRIDN LNLGVNYRYD NSLGLLTKKF ISLLQEADDG TLDLNHSADV LEVAKRRIYD  180
ITNVLEGIGL IEKTTKSRIR WKGFQSTKSQ GLEKQVARLK GEIEYLSAEE CRLDNCIREK  240
LEQIRTLESD VNCQKSLFLT NEDITSLPLF RDKTVIAIKA PHASSIEVPD PCEDLDLERQ  300
YKLILRSTTG PIDLFLLSKQ GRQHEDITIK HEKPLDAVST ANKMDVAYLS PVRPCSLDST  360
ASKLSGIHKI VPSHNSIDDD YWLRSEEEVS ATALWGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-24134204374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342039.20.0PREDICTED: transcription factor E2FC
TrEMBLM0ZWS10.0M0ZWS1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.12e-81E2F/DP family protein